ARCtrl.Core 3.0.0-beta.13

• .NETStandard 2.0

  • ARCtrl.CWL (>= 3.0.0-beta.13)
  • ARCtrl.FileSystem (>= 3.0.0-beta.13)

Implement ARC WR RO-Crate profile
Additions:
add ARC wr ro crate model (WIP)
add formal parameter
add computational workflow
add software source code profile
add createaction
add workflowprotocol
add ARCWorkflow to Dataset
add arcrun
add workflowinvocation
implement first approach to conversion of Workflow object
rename CWL Description to ProcessingUnit and add parsers
add CWLProcessingUnit as property to ArcRun and ArcWorkflow
include cwl files in ARC Scaffold parsing
add workflow and run cwl parsing tests
add CWLParameterReference type
add YAML parameter file parsing
add direct parameterfile decode function
add cwl yml input parameters to run object and arc parsing
first version of parsing to arc-wr-ro-crate
add basic WR to RO-Crate conversion tests
update rocrate workflow and run compose functions to include fs information
various changes to ROCrate conversion of CWLInputs
improve cwl ro-crate conversion to include parameter types
add some cwl test objects and ro-crate conversion tests
finish up first batch of cwl ro-crate parser tests
add some basic ro-crate to scaffold workflow converter functions
finish first implementation to workflow ro-crate reader
add ArcWorkflow ROCrate Conversion tests
finish up first version of workflow and run ro-crate conversion and roundabout tests
some restructuring of the ro-crate types and conversion functions
add setup instructions and script for unix
add default programmingLanguages for RO-Crate export
make ldcontext resolove http and https as interchangeable
update index.ts and rocrate.py
Deletions:
remove some unnecessary fields from ROCrate Workflow
Bugfixes:
fix tests for dotnet sequences
some fixes and adjustments to JSON-LD base types
fix and add formalparameter ro-crate conversion tests
add first cwlROCrate roundabout tests and according fixes
additional fixes towards Workflow Invocation conversion
fix workflowinvcation writing test failing
small fix to createAction URL and WorkflowInput additionalType
fix FormalParameter lacking additional type property when being written
fix ld context term resolving for compacted https insensitity
update ro-crate context from1.2-DRAFT to 1.2 and fix bioschemas property urls
fix test failing for updated ro-crate context